STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL49437.1Beta-lysine 5,6-aminomutase beta subunit. (269 aa)    
Predicted Functional Partners:
SCL49443.1
Beta-lysine 5,6-aminomutase alpha subunit.
 
  0.999
SCL49452.1
L-erythro-3,5-diaminohexanoate dehydrogenase; Manually curated.
 
 
 0.997
SCL49432.1
3-aminobutyryl-CoA ammonia-lyase.
 
     0.974
SCL49457.1
L-lysine 2,3-aminomutase.
 
  
  0.961
SCL49426.1
Conserved hypothetical protein.
 
     0.959
SCL61491.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
   
  0.873
SCL52363.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.858
SCL49447.1
Hypothetical protein.
       0.798
SCL67592.1
Uncharacterized conserved protein, DUF849 family.
 
     0.781
SCL55601.1
L-lysine 2,3-aminomutase.
 
  
  0.759
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.