Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCL50400.1 | SCL50404.1 | GA0070603_0977 | GA0070603_0978 | Predicted arabinose efflux permease, MFS family. | Thioredoxin reductase. | 0.891 |
SCL50404.1 | SCL50400.1 | GA0070603_0978 | GA0070603_0977 | Thioredoxin reductase. | Predicted arabinose efflux permease, MFS family. | 0.891 |
SCL50404.1 | SCL53304.1 | GA0070603_0978 | GA0070603_1573 | Thioredoxin reductase. | Ferredoxin-NADP reductase. | 0.680 |
SCL50404.1 | SCL58805.1 | GA0070603_0978 | GA0070603_2695 | Thioredoxin reductase. | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | 0.851 |
SCL50404.1 | SCL60192.1 | GA0070603_0978 | GA0070603_2968 | Thioredoxin reductase. | Hypothetical protein. | 0.662 |
SCL50404.1 | SCL62064.1 | GA0070603_0978 | GA0070603_3330 | Thioredoxin reductase. | Thioredoxin; Belongs to the thioredoxin family. | 0.662 |
SCL50404.1 | SCL62804.1 | GA0070603_0978 | GA0070603_3471 | Thioredoxin reductase. | Thioredoxin; Belongs to the thioredoxin family. | 0.662 |
SCL50404.1 | SCL63632.1 | GA0070603_0978 | GA0070603_3633 | Thioredoxin reductase. | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | 0.680 |
SCL50404.1 | SCL65613.1 | GA0070603_0978 | GA0070603_4008 | Thioredoxin reductase. | Thioredoxin; Belongs to the thioredoxin family. | 0.662 |
SCL50404.1 | SCL71211.1 | GA0070603_0978 | GA0070603_5837 | Thioredoxin reductase. | Glutamate synthase (NADH) large subunit. | 0.797 |
SCL50404.1 | gcvP | GA0070603_0978 | GA0070603_0683 | Thioredoxin reductase. | Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.694 |
SCL53304.1 | SCL50404.1 | GA0070603_1573 | GA0070603_0978 | Ferredoxin-NADP reductase. | Thioredoxin reductase. | 0.680 |
SCL53304.1 | SCL63632.1 | GA0070603_1573 | GA0070603_3633 | Ferredoxin-NADP reductase. | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | 0.711 |
SCL53304.1 | SCL71211.1 | GA0070603_1573 | GA0070603_5837 | Ferredoxin-NADP reductase. | Glutamate synthase (NADH) large subunit. | 0.478 |
SCL58805.1 | SCL50404.1 | GA0070603_2695 | GA0070603_0978 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Thioredoxin reductase. | 0.851 |
SCL58805.1 | SCL60192.1 | GA0070603_2695 | GA0070603_2968 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Hypothetical protein. | 0.642 |
SCL58805.1 | SCL62064.1 | GA0070603_2695 | GA0070603_3330 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Thioredoxin; Belongs to the thioredoxin family. | 0.713 |
SCL58805.1 | SCL62804.1 | GA0070603_2695 | GA0070603_3471 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Thioredoxin; Belongs to the thioredoxin family. | 0.642 |
SCL58805.1 | SCL65613.1 | GA0070603_2695 | GA0070603_4008 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Thioredoxin; Belongs to the thioredoxin family. | 0.642 |
SCL58805.1 | SCL71211.1 | GA0070603_2695 | GA0070603_5837 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Glutamate synthase (NADH) large subunit. | 0.623 |
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