STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL51156.1Catechol 2,3-dioxygenase. (377 aa)    
Predicted Functional Partners:
SCL51162.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
     0.947
SCL51176.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
 
  
  0.947
SCL51169.1
DoxX-like family protein.
 
     0.916
SCL51151.1
Transcriptional regulator, TetR family.
 
     0.887
SCL51167.1
fatty-acyl-CoA synthase.
 
     0.849
SCL69418.1
(R)-ethylmalonyl-CoA mutase.
    
 0.728
SCL51180.1
Uncharacterized membrane protein.
       0.651
SCL62254.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.620
SCL47882.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
 0.578
SCL64851.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 
  0.539
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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