STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60330.1MoxR-like ATPase. (329 aa)    
Predicted Functional Partners:
SCL60335.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
    0.968
SCL60325.1
Hypothetical protein.
 
     0.929
SCL60316.1
Hypothetical protein.
       0.900
SCL60320.1
Protein of unknown function.
       0.900
SCL60311.1
Two-component system, OmpR family, response regulator MtrA.
       0.673
SCL60309.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
       0.644
SCL60306.1
Sporulation and spore germination.
       0.632
SCL60302.1
Predicted amidophosphoribosyltransferases.
       0.615
SCL46553.1
Magnesium chelatase subunit D.
  
 
 0.566
SCL60340.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
 
    0.497
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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