STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60515.1DNA-binding transcriptional regulator, XRE-family HTH domain. (103 aa)    
Predicted Functional Partners:
SCL71330.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
 
  0.677
SCL62838.1
Helix-turn-helix domain-containing protein.
  
     0.490
SCL69240.1
WGR domain-containing protein, predicted DNA-binding domain in MolR.
  
     0.484
SCL67131.1
Protein of unknown function.
  
     0.473
SCL55774.1
Helix-turn-helix domain-containing protein.
  
     0.470
SCL70178.1
Helix-turn-helix domain-containing protein.
  
     0.466
SCL53119.1
Lantibiotic dehydratase, C terminus.
  
     0.464
SCL48333.1
TIGR03083 family protein.
   
   0.444
SCL67665.1
TIGR03083 family protein.
   
   0.444
SCL64926.1
Protein of unknown function.
  
     0.425
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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