STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62850.1CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase. (730 aa)    
Predicted Functional Partners:
SCL62866.1
ABC-2 type transport system permease protein.
 
  
 0.903
SCL62861.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.900
SCL49277.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
 
 0.837
SCL55251.1
Teichoic acid transport system ATP-binding protein.
 
 
 0.831
SCL55246.1
Teichoic acid transport system permease protein.
 
  
 0.820
SCL70057.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
  
 
 0.814
SCL62856.1
CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
    0.800
SCL66136.1
Choline kinase.
 
  
 0.705
SCL55067.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
  
 0.696
SCL66179.1
Capsular polysaccharide biosynthesis protein.
 
  
 0.675
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.