STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL64209.1Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. (283 aa)    
Predicted Functional Partners:
SCL69735.1
uroporphyrinogen-III C-methyltransferase.
  
  
 0.762
SCL49868.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
  
 0.705
SCL68520.1
Assimilatory nitrite reductase (NAD(P)H) large subunit precursor; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 0.705
SCL68523.1
Assimilatory nitrate reductase (NADH) beta subunit.
  
 0.705
SCL71211.1
Glutamate synthase (NADH) large subunit.
   
 
 0.644
SCL67863.1
uroporphyrinogen-III C-methyltransferase.
  
  
 0.620
SCL64214.1
cob(II)yrinic acid a,c-diamide reductase.
       0.615
SCL53304.1
Ferredoxin-NADP reductase.
  
 
 0.609
SCL63632.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.609
SCL49770.1
ChaB protein.
  
     0.522
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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