STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL65204.1PASTA domain-containing protein. (312 aa)    
Predicted Functional Partners:
SCL51991.1
Signal transduction histidine kinase.
   
 0.693
SCL63921.1
Signal transduction histidine kinase; Manually curated.
  
 0.659
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.578
SCL65209.1
PASTA domain-containing protein.
  
   0.573
SCL47198.1
Capsular exopolysaccharide family.
    
   0.536
SCL46430.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
    
 0.463
SCL69436.1
FHA domain-containing protein.
   
 
 0.458
SCL64941.1
Serine/threonine protein phosphatase PrpC.
   
   0.441
SCL48910.1
FHA domain-containing protein.
    
   0.439
SCL65149.1
FHA domain-containing protein.
    
   0.439
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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