STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL67131.1Protein of unknown function. (69 aa)    
Predicted Functional Partners:
SCL68980.1
Protein of unknown function.
  
     0.639
SCL70178.1
Helix-turn-helix domain-containing protein.
  
     0.602
SCL69962.1
Protein of unknown function.
  
     0.592
SCL54752.1
Hypothetical protein.
  
     0.541
SCL53056.1
Protein of unknown function.
  
     0.530
SCL62838.1
Helix-turn-helix domain-containing protein.
  
     0.528
SCL67134.1
Polyketide cyclase / dehydrase and lipid transport.
       0.512
SCL58659.1
Helix-turn-helix domain-containing protein.
 
     0.510
SCL66050.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.503
SCL67123.1
Hypothetical protein.
       0.482
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.