STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL67603.1Helix-turn-helix. (204 aa)    
Predicted Functional Partners:
SCL67606.1
Hypothetical protein.
       0.773
SCL67614.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.759
SCL70879.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.724
SCL68998.1
Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family.
  
     0.702
SCL67610.1
Protein of unknown function.
       0.681
SCL66773.1
Arsenite efflux ATP-binding protein ArsA.
  
     0.657
SCL67616.1
Misacylated tRNA(Ala) deacylase.
       0.608
SCL67823.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
     0.602
SCL66769.1
Anion-transporting ATPase, ArsA/GET3 family.
  
     0.596
SCL67820.1
UDP-glucose 4-epimerase.
  
     0.585
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.