SCL67904.1 protein (Micromonospora chersina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCL67904.1

Methyltransferase domain-containing protein. (228 aa)

Predicted Functional Partners:

SCL55621.1

0.827

SCL55815.1

0.827

SCL55626.1

0.737

SCL55820.1

0.737

SCL46046.1

0.636

SCL54512.1

0.620

SCL53110.1

0.608

SCL52313.1

0.594

SCL46042.1

0.582

SCL71888.1

0.582

Your Current Organism:

Micromonospora chersina

NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCL46042.1	SCL46046.1	GA0070603_0070	GA0070603_0071	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46042.1	SCL52313.1	GA0070603_0070	GA0070603_1376	Amino acid adenylation domain-containing protein.	Ubiquinone/menaquinone biosynthesis C-methylase UbiE; Manually curated.	0.582
SCL46042.1	SCL53110.1	GA0070603_0070	GA0070603_1534	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SCL46042.1	SCL54512.1	GA0070603_0070	GA0070603_1818	Amino acid adenylation domain-containing protein.	Methyltransferase domain-containing protein.	0.637
SCL46042.1	SCL55621.1	GA0070603_0070	GA0070603_2039	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46042.1	SCL55626.1	GA0070603_0070	GA0070603_2040	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46042.1	SCL55815.1	GA0070603_0070	GA0070603_2078	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46042.1	SCL55820.1	GA0070603_0070	GA0070603_2079	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46042.1	SCL67904.1	GA0070603_0070	GA0070603_4608	Amino acid adenylation domain-containing protein.	Methyltransferase domain-containing protein.	0.582
SCL46042.1	SCL71888.1	GA0070603_0070	GA0070603_6112	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
SCL46046.1	SCL46042.1	GA0070603_0071	GA0070603_0070	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46046.1	SCL52313.1	GA0070603_0071	GA0070603_1376	Amino acid adenylation domain-containing protein.	Ubiquinone/menaquinone biosynthesis C-methylase UbiE; Manually curated.	0.636
SCL46046.1	SCL53110.1	GA0070603_0071	GA0070603_1534	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SCL46046.1	SCL54512.1	GA0070603_0071	GA0070603_1818	Amino acid adenylation domain-containing protein.	Methyltransferase domain-containing protein.	0.693
SCL46046.1	SCL55621.1	GA0070603_0071	GA0070603_2039	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46046.1	SCL55626.1	GA0070603_0071	GA0070603_2040	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46046.1	SCL55815.1	GA0070603_0071	GA0070603_2078	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46046.1	SCL55820.1	GA0070603_0071	GA0070603_2079	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SCL46046.1	SCL67904.1	GA0070603_0071	GA0070603_4608	Amino acid adenylation domain-containing protein.	Methyltransferase domain-containing protein.	0.636
SCL46046.1	SCL71888.1	GA0070603_0071	GA0070603_6112	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999