STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL71499.1TIGR04222 domain-containing protein. (305 aa)    
Predicted Functional Partners:
SCL71494.1
Hypothetical protein.
 
     0.951
SCL71497.1
Hypothetical protein.
 
     0.943
SCL71491.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.667
SCL58738.1
Hypothetical protein.
  
     0.625
SCL71502.1
Transcriptional regulator, TetR family.
 
     0.604
SCL57216.1
Hypothetical protein.
  
     0.585
SCL60701.1
Hypothetical protein.
  
     0.534
SCL64297.1
MerR HTH family regulatory protein.
  
     0.498
SCL54198.1
Hypothetical protein.
  
     0.483
SCL64712.1
Hypothetical protein.
  
     0.483
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.