STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL72062.1RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)    
Predicted Functional Partners:
SCL72065.1
Hypothetical protein.
       0.776
SCL57496.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.708
SCL67829.1
Hypothetical protein.
    
   0.695
SCL65630.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.628
SCL59046.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.619
SCL59300.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.572
SCL63504.1
RNA polymerase sigma-70 factor, ECF subfamily; Non-canonical start codon; manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.559
SCL55429.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.545
SCL48240.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.536
SCL72059.1
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.531
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.