STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL49131.1Uncharacterized conserved protein. (121 aa)    
Predicted Functional Partners:
SCL49124.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.904
SCL49138.1
Protein of unknown function.
 
     0.810
SCL71024.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.780
SCL56625.1
RNA polymerase sigma factor, sigma-70 family.
 
     0.772
SCL49651.1
Hypothetical protein.
 
     0.771
SCL44722.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.769
SCL46066.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.768
SCL65544.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.768
SCL65534.1
YCII-related domain-containing protein.
  
     0.754
SCL72486.1
Uncharacterized conserved protein.
  
     0.750
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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