STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL49439.1DNA binding domain-containing protein, excisionase family. (65 aa)    
Predicted Functional Partners:
SCL69450.1
Glutamate synthase (NADH) large subunit.
    
  0.767
SCL56229.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.705
SCL65305.1
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate.
     
 0.523
SCL69882.1
Aconitate hydratase.
     
 0.493
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.