STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50038.1Hypothetical protein. (584 aa)    
Predicted Functional Partners:
SCL50062.1
Hypothetical protein.
 
 
   0.997
SCL50054.1
Exonuclease SbcC.
 
     0.948
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.941
SCL50032.1
Pyrimidine reductase, riboflavin biosynthesis.
       0.596
SCL50071.1
Hypothetical protein.
       0.592
SCL62107.1
Tetratricopeptide repeat-containing protein.
  
     0.476
SCL50077.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.454
SCL50082.1
Putative zinc-finger.
       0.452
SCL68325.1
Hypothetical protein.
  
     0.452
SCL61202.1
CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.442
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.