STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50614.1Catechol 2,3-dioxygenase. (135 aa)    
Predicted Functional Partners:
SCL50609.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
     0.914
SCL66700.1
(R)-ethylmalonyl-CoA mutase.
    
 0.774
SCL50603.1
Transcriptional regulator, ArsR family.
       0.773
SCL71992.1
Acyl transferase domain-containing protein.
  
 0.735
SCL56229.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.663
SCL71224.1
Acetyl/propionyl-CoA carboxylase, alpha subunit; Manually curated.
  
 
 0.661
SCL44653.1
4-hydroxymandelate oxidase.
     
 0.609
SCL59577.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 
 0.599
SCL71121.1
Glyoxylase, beta-lactamase superfamily II.
   
 
 0.540
SCL71126.1
Glyoxylase, beta-lactamase superfamily II.
   
 
 0.540
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.