STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54476.1Histidine triad (HIT) family protein. (136 aa)    
Predicted Functional Partners:
SCL47562.1
Diadenosine tetraphosphate (Ap4A) hydrolase.
  
  
  0.710
SCL54470.1
Cystathionine gamma-lyase.
   
   0.567
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.553
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.552
SCL50515.1
Superfamily II DNA or RNA helicase.
    
  0.543
SCL57235.1
DNA excision repair protein ERCC-3.
    
  0.543
SCL54463.1
Amidase.
       0.491
SCL69453.1
Glutamate synthase (NADH) small subunit.
  
 
   0.442
SCL50627.1
Acetoin utilization protein AcuC.
    
  0.422
SCL54456.1
Threonine dehydratase.
  
    0.412
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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