STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54538.1Lysophospholipase L1. (267 aa)    
Predicted Functional Partners:
SCL54534.1
Lysophospholipase L1.
 
    
0.924
SCL45328.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
 0.762
SCL72479.1
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10).
  
 0.654
SCL54526.1
Protein of unknown function.
 
     0.638
SCL50303.1
3-hydroxyacyl-CoA dehydrogenase.
  
  
 0.599
SCL54521.1
Cystathionine beta-synthase.
    
  0.586
SCL54154.1
Papain fold toxin 1, glutamine deamidase.
  
  0.548
SCL54543.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.528
SCL43813.1
Hypothetical protein.
   
  0.462
SCL44900.1
Hypothetical protein.
   
  0.462
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.