STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55134.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
SCL55140.1
L-lysine exporter family protein LysE/ArgO.
 
   
 0.968
SCL44181.1
DNA-binding transcriptional activator of the SARP family.
  
    0.803
SCL61023.1
Transcriptional attenuator, LytR family.
   
    0.788
cobB-2
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.778
SCL69760.1
Predicted transcriptional regulator, ArsR family.
   
    0.777
SCL71493.1
Transcriptional regulator, HxlR family.
   
    0.754
SCL72691.1
Transcriptional regulator, HxlR family.
   
    0.754
SCL71014.1
Transcriptional regulator, AraC family.
  
  
 0.713
SCL55577.1
Transcriptional regulator, GntR family.
   
    0.656
SCL72666.1
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein.
   
  
 0.650
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.