STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57127.12'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (192 aa)    
Predicted Functional Partners:
SCL57133.1
Hypothetical protein.
       0.899
SCL57138.1
Predicted arabinose efflux permease, MFS family.
       0.494
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
    
  0.492
SCL57146.1
DNA-binding transcriptional regulator, MarR family.
       0.455
SCL69325.1
Hypothetical protein.
 
     0.400
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.