STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59857.1Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Belongs to the SEDS family. (497 aa)    
Predicted Functional Partners:
SCL59851.1
Cell elongation-specific peptidoglycan D,D-transpeptidase.
 0.999
SCL69256.1
Peptidoglycan synthetase FtsI.
 0.996
SCL59843.1
Serine/threonine protein kinase.
 
 0.968
SCL66803.1
Cell division protein FtsI/penicillin-binding protein 2.
  
 0.957
SCL69277.1
Cell division protein FtsQ; Essential cell division protein.
  
 
 0.947
SCL65247.1
Protein of unknown function.
   
 
 0.938
SCL59880.1
FHA domain-containing protein.
 
   
 0.936
SCL59848.1
Serine/threonine protein kinase.
  
 
 0.928
SCL59872.1
FHA domain-containing protein.
 
   
 0.927
mraY
Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
 
 0.908
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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