STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL64677.1Probable F420-dependent oxidoreductase, Rv1855c family. (316 aa)    
Predicted Functional Partners:
SCL71972.1
Amino acid adenylation domain-containing protein.
   
 0.924
SCL71976.1
Amino acid adenylation domain-containing protein.
   
 0.924
SCL64685.1
NitT/TauT family transport system ATP-binding protein.
 
 
 0.908
SCL44441.1
AMP-binding enzyme C-terminal domain-containing protein.
   
 0.845
SCL52686.1
Amino acid adenylation domain-containing protein.
   
 0.845
SCL64664.1
Hypothetical protein.
       0.785
SCL64691.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.761
SCL69493.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
   
 0.714
SCL64697.1
NitT/TauT family transport system permease protein.
 
 
  0.706
SCL54308.1
LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.701
Your Current Organism:
Micromonospora citrea
NCBI taxonomy Id: 47855
Other names: ATCC 35571, DSM 43903, IFO 14025, JCM 3256, M. citrea, Micromonospora citrea Kroppenstedt et al. 2005, NRRL B-16101
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