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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG34012.1RNA polymerase sigma-70 factor, ECF subfamily. (169 aa)    
Predicted Functional Partners:
SCG35826.1
Hypothetical protein.
   
   0.883
SCG34010.1
Hypothetical protein.
  
    0.794
SCG57183.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.765
SCG71022.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.757
SCG71711.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.757
SCG63202.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.750
SCG41433.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.749
SCG51614.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.739
SCG39176.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.736
SCG33974.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.734
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.