STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG34116.1GntR family transcriptional regulator. (136 aa)    
Predicted Functional Partners:
SCG35565.1
Regulatory protein, gntR family.
  
     0.748
SCG72201.1
Regulatory protein, gntR family.
  
     0.725
SCG61677.1
Regulatory protein, gntR family.
  
     0.576
SCG70852.1
Transcriptional regulator, GntR family.
  
    0.549
SCG45947.1
Transcriptional regulator, GntR family.
  
    0.548
SCG34113.1
Hypothetical protein.
       0.465
SCG34114.1
DivIVA domain-containing protein.
       0.465
SCG48462.1
Transcriptional attenuator, LytR family.
   
    0.420
SCG66540.1
Cupin domain.
  
    0.400
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.