Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCG34136.1Streptogrisin C. (524 aa)    
Predicted Functional Partners:
SCG44825.1
Hypothetical protein.
  
     0.714
SCG71133.1
Hypothetical protein.
  
     0.699
SCG72163.1
Alpha/beta hydrolase family.
  
     0.659
SCG34462.1
Predicted outer membrane protein.
  
     0.656
SCG41511.1
Hypothetical protein.
  
     0.588
SCG55472.1
Hypothetical protein.
  
     0.583
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.
       0.574
SCG44853.1
Hypothetical protein.
  
     0.557
SCG63857.1
Phosphate starvation-inducible protein PhoH.
  
     0.522
SCG39252.1
Choice-of-anchor B domain-containing protein.
  
     0.508
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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