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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG34158.1Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. (405 aa)    
Predicted Functional Partners:
SCG33915.1
2-oxoglutarate dehydrogenase E1 component.
   
 
 0.993
SCG53564.1
Aconitate hydratase.
  
 0.990
SCG56837.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.975
SCG34166.1
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 
 0.973
SCG37288.1
Glutamate synthase (NADH) large subunit.
    
 0.971
SCG57408.1
3-isopropylmalate dehydrogenase.
  
 0.950
SCG59384.1
3-isopropylmalate dehydrogenase.
  
 0.950
SCG40569.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 
 0.936
SCG50134.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.934
SCG62760.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.934
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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