STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG34271.1Oligopeptide transport system substrate-binding protein. (546 aa)    
Predicted Functional Partners:
SCG34265.1
Oligopeptide transport system permease protein.
 
 
 0.968
SCG34259.1
Oligopeptide transport system permease protein.
 
 
 0.964
SCG34179.1
Oligopeptide transport system permease protein.
 
 
 0.936
SCG34174.1
Oligopeptide transport system permease protein.
 
 
 0.933
SCG34256.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.933
SCG34251.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.900
SCG34183.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.878
SCG55357.1
Peptide/nickel transport system permease protein.
 
 
 0.866
SCG56022.1
Peptide/nickel transport system permease protein.
 
 
 0.864
SCG55366.1
Peptide/nickel transport system permease protein.
 
 
 0.861
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.