Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
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Co-expression
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[Homology]
Score
SCG34418.1Signal transduction histidine kinase. (597 aa)    
Predicted Functional Partners:
SCG34423.1
Two component transcriptional regulator, LuxR family.
 
 0.967
SCG69324.1
Two component transcriptional regulator, LuxR family.
 
 0.857
SCG70622.1
Two-component system, NarL family, response regulator DesR.
 
 0.857
SCG70628.1
Two-component system, NarL family, response regulator DesR.
 
 0.857
SCG38188.1
Two component transcriptional regulator, LuxR family.
 
 0.855
SCG37760.1
Two component transcriptional regulator, LuxR family.
 
 0.854
SCG39327.1
Two component transcriptional regulator, LuxR family.
 
 0.854
SCG43160.1
Two component transcriptional regulator, LuxR family.
 
 0.854
SCG44739.1
Two component transcriptional regulator, LuxR family.
 
 0.854
SCG50732.1
Two component transcriptional regulator, LuxR family.
 
 0.853
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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