SCG35654.1 protein (Micromonospora halophytica)

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SCG35654.1

Smr domain-containing protein. (84 aa)

Predicted Functional Partners:

rpsG

0.663

rpsL

0.663

rpsJ

0.654

rpsI

0.651

rplM

0.651

rplQ

0.651

rpsD

0.651

rpsK

0.651

rplO

0.651

rpmD

0.651

Your Current Organism:

Micromonospora halophytica

NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCG35654.1	rplM	GA0070560_101470	GA0070560_101311	Smr domain-containing protein.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.651
SCG35654.1	rplO	GA0070560_101470	GA0070560_101353	Smr domain-containing protein.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.651
SCG35654.1	rplQ	GA0070560_101470	GA0070560_101344	Smr domain-containing protein.	LSU ribosomal protein L17P.	0.651
SCG35654.1	rpmD	GA0070560_101470	GA0070560_101354	Smr domain-containing protein.	LSU ribosomal protein L30P.	0.651
SCG35654.1	rpsD	GA0070560_101470	GA0070560_101346	Smr domain-containing protein.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.651
SCG35654.1	rpsG	GA0070560_101470	GA0070560_101376	Smr domain-containing protein.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.663
SCG35654.1	rpsI	GA0070560_101470	GA0070560_101310	Smr domain-containing protein.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.651
SCG35654.1	rpsJ	GA0070560_101470	GA0070560_101373	Smr domain-containing protein.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.654
SCG35654.1	rpsK	GA0070560_101470	GA0070560_101347	Smr domain-containing protein.	Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.651
SCG35654.1	rpsL	GA0070560_101470	GA0070560_101377	Smr domain-containing protein.	SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.663
rplM	SCG35654.1	GA0070560_101311	GA0070560_101470	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Smr domain-containing protein.	0.651
rplM	rplO	GA0070560_101311	GA0070560_101353	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.998
rplM	rplQ	GA0070560_101311	GA0070560_101344	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L17P.	0.997
rplM	rpmD	GA0070560_101311	GA0070560_101354	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L30P.	0.996
rplM	rpsD	GA0070560_101311	GA0070560_101346	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.996
rplM	rpsG	GA0070560_101311	GA0070560_101376	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.997
rplM	rpsI	GA0070560_101311	GA0070560_101310	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsJ	GA0070560_101311	GA0070560_101373	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.996
rplM	rpsK	GA0070560_101311	GA0070560_101347	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.997
rplM	rpsL	GA0070560_101311	GA0070560_101377	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.997

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