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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG33760.1ABC-2 type transport system ATP-binding protein. (281 aa)    
Predicted Functional Partners:
SCG33761.1
ABC-2 type transport system permease protein.
 
 
  0.960
SCG54071.1
ABC-type multidrug transport system, permease component.
 
 
  0.775
SCG57114.1
Oleandomycin transport system permease protein.
 
 0.607
SCG67774.1
ABC-type multidrug transport system, permease component.
 
 0.596
SCG41747.1
ABC-2 type transport system permease protein.
  
 
  0.577
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.550
SCG34140.1
ABC-2 type transport system permease protein.
   
  0.547
SCG42685.1
ABC-2 family transporter protein.
   
  0.547
SCG61536.1
ABC-2 family transporter protein.
   
  0.547
SCG61655.1
ABC-2 type transport system permease protein.
   
  0.547
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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