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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG35861.1Putative ABC transport system ATP-binding protein. (319 aa)    
Predicted Functional Partners:
SCG35856.1
Putative ABC transport system permease protein.
 0.999
SCG35868.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.981
SCG54877.1
Putative ABC transport system permease protein.
 
 0.897
SCG52873.1
Putative ABC transport system permease protein.
  
  0.828
SCG72004.1
FtsX-like permease family protein.
  
  0.821
SCG51700.1
Putative ABC transport system permease protein.
  
  0.819
SCG51707.1
FtsX-like permease family protein.
  
  0.819
SCG34201.1
Interferon-induced transmembrane protein.
   
 0.704
SCG35876.1
Peptidase MA superfamily.
       0.618
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.484
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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