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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG35939.1Two-component system, OmpR family, sensor histidine kinase SenX3. (426 aa)    
Predicted Functional Partners:
SCG70017.1
Signal transduction histidine kinase.
 
0.996
SCG35932.1
Two-component system, OmpR family, response regulator RegX3.
 0.995
SCG70954.1
HAMP domain-containing protein.
 
 0.994
SCG46003.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.981
SCG60779.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.955
SCG42869.1
Two-component system, OmpR family, response regulator MtrA.
 0.927
SCG46111.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.927
SCG60150.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.924
SCG33904.1
Two-component system, OmpR family, response regulator.
 0.920
SCG50089.1
Two-component system, OmpR family, response regulator.
 0.917
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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