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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG36010.1TIGR03083 family protein. (252 aa)    
Predicted Functional Partners:
SCG39600.1
Helix-turn-helix domain-containing protein.
   
 
 0.928
SCG55509.1
Helix-turn-helix domain-containing protein.
   
 
 0.928
SCG56487.1
Hypothetical protein.
  
     0.600
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.589
SCG48647.1
CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.570
SCG57956.1
DivIVA domain-containing protein.
  
     0.560
SCG71732.1
Hypothetical protein.
  
   0.559
SCG72123.1
Hypothetical protein.
  
   0.558
SCG52675.1
Protein of unknown function.
  
     0.557
SCG56500.1
Hypothetical protein.
  
     0.547
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.