Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCG33852.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
SCG33854.1
Hypothetical protein.
 
     0.898
SCG33851.1
Predicted dehydrogenase.
       0.577
SCG48259.1
Protein of unknown function.
  
     0.565
SCG48501.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.532
SCG34019.1
Hypothetical protein.
  
     0.469
SCG54620.1
Hypothetical protein.
  
     0.424
SCG69649.1
Fibronectin type III domain.
  
     0.420
SCG68488.1
Protein of unknown function.
  
     0.405
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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