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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG36689.1Fe-S cluster assembly ATP-binding protein. (257 aa)    
Predicted Functional Partners:
SCG36703.1
Iron-regulated ABC transporter permease protein SufD.
 
 0.999
SCG36719.1
Iron-regulated ABC transporter membrane component SufB.
 0.999
SCG36668.1
Nitrogen fixation protein NifU.
 
 
 0.998
SCG36681.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.992
SCG36661.1
Metal-sulfur cluster biosynthetic enzyme.
 
  
 0.964
SCG61821.1
Selenocysteine lyase/Cysteine desulfurase.
 
 
 0.958
SCG64902.1
Cysteine desulfurase family protein, VC1184 subfamily.
 
 
 0.944
SCG59130.1
Selenocysteine lyase/Cysteine desulfurase.
 
 
 0.933
SCG64702.1
Selenocysteine lyase/Cysteine desulfurase.
 
 
 0.875
SCG57881.1
isopenicillin-N epimerase.
 
 
 0.866
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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