STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG36726.1Predicted transcriptional regulator, ArsR family. (266 aa)    
Predicted Functional Partners:
SCG36719.1
Iron-regulated ABC transporter membrane component SufB.
  
    0.980
SCG36668.1
Nitrogen fixation protein NifU.
  
  
 0.792
SCG65091.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
   
    0.784
SCG48462.1
Transcriptional attenuator, LytR family.
   
    0.782
SCG36703.1
Iron-regulated ABC transporter permease protein SufD.
  
    0.773
cobB-2
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.766
cobB-3
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.766
SCG43022.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.763
SCG36689.1
Fe-S cluster assembly ATP-binding protein.
  
    0.759
SCG63756.1
Zinc uptake regulator, Fur family; Belongs to the Fur family.
   
    0.748
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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