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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG38702.1Predicted membrane protein. (644 aa)    
Predicted Functional Partners:
SCG63833.1
Acyltransferase family protein.
 
 
 0.658
SCG41490.1
Hypothetical protein.
  
     0.634
SCG48135.1
Protein of unknown function.
  
 
  0.618
SCG47260.1
Pyridoxamine 5'-phosphate oxidase.
  
     0.616
lipB
Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
       0.609
SCG38710.1
Hypothetical protein.
       0.605
SCG35453.1
Hypothetical protein.
  
     0.588
SCG65932.1
Septum formation.
  
     0.583
SCG39035.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.579
SCG38694.1
Feruloyl esterase.
       0.552
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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