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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG36888.1Acyl-homoserine lactone (AHL) acylase PvdQ. (1081 aa)    
Predicted Functional Partners:
SCG58535.1
Act minimal PKS acyl carrier protein.
  
    0.696
SCG54250.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
  
    0.626
SCG54266.1
Acyl transferase domain-containing protein.
  
  
 0.622
SCG36882.1
Hypothetical protein.
       0.554
SCG58492.1
Aromatase.
  
     0.553
SCG71117.1
Amino acid adenylation domain-containing protein.
  
    0.451
SCG60634.1
DNA gyrase subunit A.
 
     0.443
SCG68556.1
Acetyltransferase (GNAT) family protein.
  
     0.439
SCG59886.1
Hypothetical protein.
  
     0.431
SCG34489.1
TIGR03083 family protein.
  
     0.419
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.