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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG39865.1Lipooligosaccharide transport system permease protein. (269 aa)    
Predicted Functional Partners:
SCG39885.1
Lipooligosaccharide transport system ATP-binding protein.
 
 
  0.985
SCG39873.1
Lipooligosaccharide transport system permease protein.
 
  
 
0.882
SCG39859.1
Membrane protein.
       0.586
SCG39879.1
Hypothetical protein.
       0.561
SCG41739.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.555
SCG58304.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.531
SCG70031.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.523
SCG68957.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.519
SCG54077.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.513
SCG67768.1
ABC transporter.
  
 
  0.504
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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