SCG41145.1 protein (Micromonospora halophytica)

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SCG41145.1

ATPase components of ABC transporters with duplicated ATPase domains. (599 aa)

Predicted Functional Partners:

rpsK

0.912

rpmD

0.911

rpsE

0.909

rplM

0.903

rpsC

0.903

rpsO

0.903

rplU

0.903

rplC

0.901

rpmF

0.901

rplR

0.900

Your Current Organism:

Micromonospora halophytica

NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCG41145.1	rplC	GA0070560_103109	GA0070560_101372	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.901
SCG41145.1	rplM	GA0070560_103109	GA0070560_101311	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.903
SCG41145.1	rplR	GA0070560_103109	GA0070560_101356	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.900
SCG41145.1	rplU	GA0070560_103109	GA0070560_119106	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.903
SCG41145.1	rpmD	GA0070560_103109	GA0070560_101354	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L30P.	0.911
SCG41145.1	rpmF	GA0070560_103109	GA0070560_111108	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.901
SCG41145.1	rpsC	GA0070560_103109	GA0070560_101366	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.903
SCG41145.1	rpsE	GA0070560_103109	GA0070560_101355	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.909
SCG41145.1	rpsK	GA0070560_103109	GA0070560_101347	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.912
SCG41145.1	rpsO	GA0070560_103109	GA0070560_107214	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.903
rplC	SCG41145.1	GA0070560_101372	GA0070560_103109	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATPase components of ABC transporters with duplicated ATPase domains.	0.901
rplC	rplM	GA0070560_101372	GA0070560_101311	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplR	GA0070560_101372	GA0070560_101356	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplU	GA0070560_101372	GA0070560_119106	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplC	rpmD	GA0070560_101372	GA0070560_101354	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L30P.	0.999
rplC	rpmF	GA0070560_101372	GA0070560_111108	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.985
rplC	rpsC	GA0070560_101372	GA0070560_101366	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsE	GA0070560_101372	GA0070560_101355	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.999
rplC	rpsK	GA0070560_101372	GA0070560_101347	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.998
rplC	rpsO	GA0070560_101372	GA0070560_107214	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997

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