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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG41555.1Predicted transcriptional regulator. (132 aa)    
Predicted Functional Partners:
SCG41547.1
Peptidase family M48.
 
 
  0.958
SCG70306.1
Peptidase family M48.
 
 
  0.826
SCG62455.1
Copper ion binding protein.
  
  
 0.689
SCG70401.1
Copper chaperone CopZ.
  
  
 0.689
SCG41526.1
ATP-binding cassette, subfamily C, CydD.
       0.575
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
    
  0.567
SCG41519.1
ATP-binding cassette, subfamily C, CydC.
       0.552
SCG41539.1
Cytochrome d ubiquinol oxidase subunit I.
       0.544
SCG41532.1
Cytochrome d oxidase, subunit II (cydB).
       0.541
SCG41561.1
Aldehyde dehydrogenase family protein.
       0.530
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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