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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG42179.1Protein of unknown function. (248 aa)    
Predicted Functional Partners:
SCG42200.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
     0.971
SCG42193.1
MoxR-like ATPase.
       0.887
SCG42173.1
uracil-DNA glycosylase, family 4.
       0.859
SCG42186.1
Hypothetical protein.
       0.847
SCG42206.1
Hypothetical protein.
       0.776
SCG42166.1
Carboxymethylenebutenolidase.
       0.747
SCG38533.1
WG containing repeat-containing protein.
  
     0.685
SCG64450.1
Hypothetical protein.
  
     0.626
SCG64415.1
O-antigen ligase like membrane protein.
  
     0.594
SCG61536.1
ABC-2 family transporter protein.
  
     0.576
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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