Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCG42478.1TIGR03089 family protein. (229 aa)    
Predicted Functional Partners:
SCG58212.1
Acyl transferase domain-containing protein.
  
 0.958
SCG58239.1
Acyl transferase domain-containing protein.
  
 0.958
SCG58259.1
Acyl transferase domain-containing protein.
  
 0.958
SCG58287.1
Acyl transferase domain-containing protein.
  
 0.958
SCG58296.1
Acyl transferase domain-containing protein.
  
 0.958
SCG58221.1
Acyl transferase domain-containing protein.
  
 0.958
SCG59425.1
A-type KR domain-containing polyene macrolide polyketide synthase.
  
 0.958
SCG72096.1
Phosphopantetheine attachment site.
  
 0.958
SCG54266.1
Acyl transferase domain-containing protein.
  
 0.941
SCG46370.1
Rifamycin polyketide synthase modules 9 and 10.
  
 0.939
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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