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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG43544.1Beta-lactamase class A. (295 aa)    
Predicted Functional Partners:
SCG50194.1
Beta-lactamase class A.
 
  
  0.909
SCG36984.1
Beta-lactamase class A.
  
  
  0.891
SCG43536.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.750
SCG66397.1
DNA-binding transcriptional regulator, MerR family.
  
     0.623
SCG43552.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.571
SCG61398.1
Protein of unknown function.
  
     0.552
SCG42520.1
Helix-turn-helix domain-containing protein.
  
     0.502
SCG44825.1
Hypothetical protein.
  
     0.478
SCG43528.1
Endonuclease I.
       0.460
SCG50016.1
Anti-sigma B factor antagonist.
  
     0.449
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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