close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG40428.1Helix-turn-helix domain-containing protein. (100 aa)    
Predicted Functional Partners:
SCG70638.1
Anti-sigma-D factor RsdA to sigma factor binding region.
  
     0.664
SCG53388.1
Subtilisin inhibitor-like; Belongs to the protease inhibitor I16 (SSI) family.
  
     0.658
SCG50578.1
Hypothetical protein.
  
     0.597
SCG43433.1
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist.
  
     0.576
SCG60947.1
dGTPase; Belongs to the dGTPase family. Type 2 subfamily.
  
     0.571
SCG43442.1
Hypothetical protein.
  
     0.565
SCG40443.1
ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family.
    
  0.511
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
  0.505
SCG40435.1
Hypothetical protein.
 
     0.500
SCG58661.1
Oxidase EvaA.
  
     0.490
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.