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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG44182.1Protein of unknown function. (180 aa)    
Predicted Functional Partners:
SCG44189.1
Hypothetical protein.
       0.705
SCG44195.1
Hypothetical protein.
       0.705
SCG44200.1
DNA-binding transcriptional regulator of glucitol operon.
 
     0.592
SCG69043.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.574
SCG62417.1
Protein of unknown function.
  
     0.552
SCG53527.1
Hypothetical protein.
  
     0.524
SCG44257.1
Uncharacterised nucleotidyltransferase.
 
     0.480
SCG68132.1
Protein of unknown function.
  
     0.469
SCG33998.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.451
SCG44207.1
Integral membrane protein.
       0.451
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.