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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG48449.1Transcriptional attenuator, LytR family. (312 aa)    
Predicted Functional Partners:
SCG48443.1
Rhodanese-related sulfurtransferase.
  
    0.718
SCG48435.1
Glycerophosphoryl diester phosphodiesterase.
       0.650
sepF
Cell division inhibitor SepF; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
     0.634
SCG48428.1
PAS/PAC sensor signal transduction histidine kinase.
 
     0.634
SCG64068.1
Competence protein ComEA.
 
     0.620
SCG48457.1
Transcriptional attenuator, LytR family.
 
    
0.542
SCG48462.1
Transcriptional attenuator, LytR family.
 
   
0.528
SCG47830.1
spoIIIJ-associated protein.
  
     0.509
SCG37750.1
Hypothetical protein.
  
     0.492
SCG37742.1
UDP-N-acetylmuramyl tripeptide synthase.
  
     0.460
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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