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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG47069.1PAP2 superfamily protein. (175 aa)    
Predicted Functional Partners:
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.770
SCG58800.1
Rifamycin polyketide synthase modules 1, 2 and 3.
   
 0.657
SCG70718.1
Polyketide synthase 12.
   
 0.657
SCG71526.1
Candicidin polyketide synthase FscB.
   
 0.657
SCG54250.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
   
 0.614
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.606
SCG54266.1
Acyl transferase domain-containing protein.
   
 0.589
SCG68577.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
  
 
 0.576
SCG45954.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
    
  0.513
SCG54294.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 0.475
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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