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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG47229.1Predicted dioxygenase of extradiol dioxygenase family. (130 aa)    
Predicted Functional Partners:
SCG47223.1
Hypothetical protein.
 
     0.835
SCG33758.1
(R)-ethylmalonyl-CoA mutase.
    
 0.796
SCG58800.1
Rifamycin polyketide synthase modules 1, 2 and 3.
  
 0.709
SCG70718.1
Polyketide synthase 12.
  
 0.709
SCG71526.1
Candicidin polyketide synthase FscB.
  
 0.709
SCG54051.1
Acetyl-CoA carboxylase, carboxyltransferase component.
  
 
 0.690
SCG66533.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
 0.690
SCG47215.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.678
SCG61468.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.673
SCG40569.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.641
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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